PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08755g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 78aa    MW: 8813.94 Da    PI: 8.7996
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08755g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP63.76.7e-203578548
                       TCP  5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdskti 48
                              k    k hTkv+gR+RR+ ++a+ca r+F+L++e G+++d++ti
  Niben101Scf08755g01011.1 35 KEDETKKHTKVEGRGRRISMPALCATRIFQLTRESGHKSDGETI 78
                              4456688************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136914.4743578IPR017887Transcription factor TCP subgroup
PfamPF036344.8E-133978IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MDPKQPPTQS NAININNSNN NIMVECNKPI HDQIKEDETK KHTKVEGRGR RISMPALCAT  60
RIFQLTRESG HKSDGETI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624132.12e-30PREDICTED: transcription factor TCP20
SwissprotO646473e-18TCP9_ARATH; Transcription factor TCP9
TrEMBLK4B7F21e-20K4B7F2_SOLLC; Uncharacterized protein
TrEMBLG3BGV81e-20G3BGV8_SOLLC; TCP transcription factor 18
STRINGSolyc02g068200.1.14e-20(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-19TCP family protein